Commit e4873b59 authored Oct 23, 2018 by Mateusz Pawlik

Finalized Swissprot. Tested.

parent 4ec3f4f7

swissprot/README.md

+4 −2

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		@@ -27,7 +27,8 @@ https://www.uniprot.org/downloads

		## RAM requirements

		To be measured.
		The current way of processing Swissprot dataset requires 60GB of RAM memory
		(60GB for conversion, 10GB for sorting).

		## Steps

		@@ -40,4 +41,5 @@ Execute the following to download and prepare the dataset.

		## Estimated time

		To be measured.
		On an Intel Xeon 2.40GHz CPU, it takes around 50min
		(including downloading).

swissprot/swissprot_to_bracket.py

+1 −1

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		@@ -25,7 +25,7 @@ from lxml import etree
		import lxml.sax
		from xml.sax.handler import ContentHandler

		# This script converts DBLP from XML to bracket notation.
		# This script converts Swissprot from XML to bracket notation.

		# NOTE: Filenames are hardcoded in this script.