Documenting.

- **Swissprot** - Protein sequence data in XML.

The details about each dataset can be found in the README files in the

datasets subdirectories.

corresponding subdirectories.

## Statistics

The `statistics` subdirectory contains scripts to summirize the data. The table

The `statistics` subdirectory contains scripts to summarize the data. The table

below shows the statistics of our datasets.

Dataset   | Number of trees | Avg. tree size | Min tree size | Max tree size | Number of distinct labels

Each dataset and its corresponding scripts belong to a separate directory with a name identifying the dataset.

There is a script `download_prepare.sh` for each dataset, that downloads the

raw data, converts to bracket notation, and sorts by tree size.

The `utilities` directory holds tools common for multiple datasets.

## RAM requirements and runtime estimates

For each dataset, if necessary, we list the required RAM memory and estimated

runtime. The RAM requirements go up to **60GB** for the Swissprot dataset.

The script `utilities/sort_dataset.sh` has a hard-coded 10GB buffer size.

However, it executes on machines with less RAM too.

## Expected output

Each output dataset must satisfy the following requirements: