Add MRIQC
Add MRIQC directory with:
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the details from https://frosch.cosy.sbg.ac.at/anc/bids-conversion-documentation/-/blob/main/after_conversion.md#mriqc-quality-control -
participant and group commands, for example: -
singularity run --bind /mnt/dbgroup-share/mpawlik/data-ccns/tot17:/data --bind /mnt/dbgroup-share/mpawlik/scratch:/work mriqc_21.0.0rc2.sif /data /data/derivatives/mriqc participant -w /work --no-sub
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singularity run --bind /mnt/dbgroup-share/mpawlik/data-ccns/tot17:/data --bind /mnt/dbgroup-share/mpawlik/scratch:/work mriqc_21.0.0rc2.sif /data /data/derivatives/mriqc group -w /work --no-sub
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Measure time and save the output similarly to fmriprep -
limit resources with https://mriqc.readthedocs.io/en/latest/running.html#Options%20to%20handle%20performance
Edited by Mateusz Pawlik